Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xre family transcriptional regulator | DWY53_16420 | Not Available | Positive | 3796341 - 3796643 | 11364.0 |
| orf6n domain-containing protein | DWY53_16425 | Not Available | Positive | 3796653 - 3797591 | 36418.8 |
| hypothetical protein | DWY53_16430 | Not Available | Negative | 3797633 - 3798928 | 49826.8 |
| fimbrillin family protein | DWY53_16435 | Not Available | Negative | 3799041 - 3801122 | 75747.7 |
| fimbrillin family protein | DWY53_16440 | Not Available | Negative | 3801283 - 3802323 | 37815.0 |
| duf5119 domain-containing protein | DWY53_16445 | Not Available | Negative | 3802377 - 3803423 | 39390.9 |
| duf3575 domain-containing protein | DWY53_16450 | Not Available | Negative | 3803420 - 3804694 | 47945.3 |
| site-specific integrase | DWY53_16455 | Not Available | Negative | 3804941 - 3806143 | 45562.9 |
| hypothetical protein | DWY53_16465 | Not Available | Negative | 3806572 - 3807705 | 42686.2 |
| recombinase family protein | DWY53_16470 | Not Available | Positive | 3808011 - 3808664 | 24993.5 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

