Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase | DWY53_16370 | Not Available | Negative | 3787746 - 3788597 | 31336.4 |
| paai family thioesterase | DWY53_16375 | Not Available | Negative | 3788826 - 3789317 | 18785.7 |
| dabb family protein | DWY53_16380 | Not Available | Negative | 3789328 - 3789627 | 11090.4 |
| uridine kinase | DWY53_16385 | Not Available | Positive | 3789733 - 3790344 | 23271.3 |
| lytic transglycosylase f | DWY53_16390 | Not Available | Positive | 3790341 - 3791720 | 52040.1 |
| hypothetical protein | DWY53_16395 | Not Available | Negative | 3792007 - 3792192 | 6642.76 |
| hypothetical protein | DWY53_16400 | Not Available | Negative | 3792723 - 3794027 | 50177.9 |
| hypothetical protein | DWY53_16405 | Not Available | Positive | 3794776 - 3795174 | 15536.1 |
| duf3089 domain-containing protein | DWY53_16410 | Not Available | Positive | 3795178 - 3795600 | 16200.2 |
| duf3089 domain-containing protein | DWY53_16415 | Not Available | Positive | 3795573 - 3796022 | 16364.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

