Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWY53_16320 | Not Available | Positive | 3779187 - 3779414 | 8190.17 |
| omph family outer membrane protein | DWY53_16325 | Not Available | Positive | 3779437 - 3780051 | 23114.4 |
| thioredoxin | DWY53_16330 | Not Available | Positive | 3780170 - 3780466 | 11334.9 |
| thioredoxin | DWY53_16335 | Not Available | Positive | 3780470 - 3780928 | 16958.8 |
| nadh peroxidase | DWY53_16340 | Not Available | Negative | 3781032 - 3781583 | 20566.4 |
| transcriptional repressor | DWY53_16345 | Not Available | Negative | 3781661 - 3782071 | 15560.8 |
| nad(+) synthase | DWY53_16350 | Not Available | Positive | 3782236 - 3784161 | 71182.6 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DWY53_16355 | Not Available | Negative | 3784251 - 3785369 | 42221.7 |
| histidinol-phosphate transaminase | DWY53_16360 | Not Available | Negative | 3785373 - 3786413 | 39610.4 |
| histidinol dehydrogenase | DWY53_16365 | Not Available | Negative | 3786416 - 3787696 | 46525.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

