Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin-dependent thiol peroxidase | DWY53_16270 | Not Available | Positive | 3764698 - 3765144 | 16910.4 |
| recombinase reca | DWY53_16275 | Not Available | Positive | 3765157 - 3766200 | 37366.7 |
| duf4923 family protein | DWY53_16280 | Not Available | Negative | 3766274 - 3766870 | 21300.9 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_16285 | Not Available | Negative | 3767076 - 3768791 | 63842.8 |
| tonb-dependent receptor | DWY53_16290 | Not Available | Negative | 3768805 - 3771843 | 111005.0 |
| helix-turn-helix domain-containing protein | DWY53_16295 | Not Available | Positive | 3772086 - 3774905 | 107437.0 |
| carboxylating nicotinate-nucleotide diphosphorylase | DWY53_16300 | Not Available | Negative | 3775010 - 3775861 | 31226.1 |
| ribosomal rna large subunit methyltransferase h | DWY53_16305 | Not Available | Positive | 3775942 - 3776415 | 18383.5 |
| endonuclease | DWY53_16310 | Not Available | Negative | 3776492 - 3777502 | 38170.7 |
| aminoacyl-histidine dipeptidase | DWY53_16315 | Not Available | Negative | 3777508 - 3778965 | 53122.6 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

