Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na(+)-translocating nadh-quinone reductase subunit a | DWY53_16170 | Not Available | Negative | 3744564 - 3745913 | 49524.8 |
| atp-dependent helicase | DWY53_16175 | Not Available | Negative | 3746159 - 3748450 | 87191.0 |
| hepn domain-containing protein | DWY53_16180 | Not Available | Negative | 3748545 - 3748946 | 15666.6 |
| nucleotidyltransferase domain-containing protein | DWY53_16185 | Not Available | Negative | 3748943 - 3749251 | 11591.2 |
| aaa family atpase | DWY53_16190 | Not Available | Negative | 3749434 - 3751002 | 59945.5 |
| duf86 domain-containing protein | DWY53_16195 | Not Available | Negative | 3751127 - 3751519 | 15161.6 |
| dna polymerase subunit beta | DWY53_16200 | Not Available | Negative | 3751512 - 3751805 | 11114.5 |
| hypothetical protein | DWY53_16205 | Not Available | Negative | 3751883 - 3752080 | 7917.8 |
| virulence protein e | DWY53_16210 | Not Available | Positive | 3752355 - 3753020 | 25081.9 |
| duf3987 domain-containing protein | DWY53_16215 | Not Available | Positive | 3753093 - 3754898 | 67498.1 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

