Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nudix hydrolase | DWY53_16070 | Not Available | Negative | 3722978 - 3723532 | 21545.7 |
| duf5131 family protein | DWY53_16075 | Not Available | Positive | 3723738 - 3724505 | 29840.6 |
| sensor protein kdpd | DWY53_16080 | Not Available | Positive | 3724685 - 3725812 | 42638.1 |
| pas domain-containing sensor histidine kinase | DWY53_16085 | Not Available | Positive | 3725825 - 3727294 | 55121.1 |
| methyltransferase | DWY53_16090 | Not Available | Negative | 3727365 - 3728033 | 24548.2 |
| dna recombination protein rmuc | DWY53_16095 | Not Available | Negative | 3728051 - 3729286 | 46960.8 |
| cof-type had-iib family hydrolase | DWY53_16100 | Not Available | Positive | 3729382 - 3730188 | 30316.9 |
| ferredoxin | DWY53_16105 | Not Available | Negative | 3730178 - 3730708 | 19120.2 |
| rna-binding protein | DWY53_16110 | Not Available | Positive | 3731002 - 3731247 | 9169.97 |
| beta-n-acetylhexosaminidase | DWY53_16115 | Not Available | Negative | 3731431 - 3733752 | 87150.3 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

