Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toxin-antitoxin system antitoxin subunit | DWY53_15970 | Not Available | Negative | 3703442 - 3703927 | 19033.9 |
| nucleotidyltransferase domain-containing protein | DWY53_15975 | Not Available | Negative | 3703924 - 3704214 | 10799.2 |
| upxy family transcription antiterminator | DWY53_15980 | Not Available | Negative | 3704282 - 3704782 | 18976.7 |
| hypothetical protein | DWY53_15985 | Not Available | Positive | 3705060 - 3705257 | 7957.92 |
| duf3987 domain-containing protein | DWY53_15990 | Not Available | Positive | 3705456 - 3707834 | 89983.4 |
| duf4248 domain-containing protein | DWY53_15995 | Not Available | Negative | 3707985 - 3708215 | 8949.8 |
| hypothetical protein | DWY53_16000 | Not Available | Positive | 3708190 - 3708372 | 7351.07 |
| dna-binding protein | DWY53_16005 | Not Available | Positive | 3708464 - 3708892 | 15594.9 |
| n-acetylmuramoyl-l-alanine amidase | DWY53_16010 | Not Available | Positive | 3709031 - 3709480 | 16921.3 |
| tyrosine protein kinase | DWY53_16015 | Not Available | Negative | 3709589 - 3712000 | 89920.0 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

