Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 1 protein | DWY53_15920 | Not Available | Negative | 3693829 - 3694896 | 41526.5 |
| hypothetical protein | DWY53_15925 | Not Available | Negative | 3694886 - 3695707 | 31403.8 |
| lipopolysaccharide biosynthesis protein | DWY53_15930 | Not Available | Negative | 3695704 - 3697128 | 53522.2 |
| hypothetical protein | DWY53_15935 | Not Available | Negative | 3697128 - 3698063 | 36413.1 |
| nucleotide sugar dehydrogenase | DWY53_15940 | Not Available | Negative | 3698201 - 3699451 | 47009.0 |
| dtdp-glucose 4,6-dehydratase | DWY53_15945 | Not Available | Negative | 3699530 - 3700603 | 41395.2 |
| dtdp-4-dehydrorhamnose reductase | DWY53_15950 | Not Available | Negative | 3700600 - 3701463 | 32448.7 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DWY53_15955 | Not Available | Negative | 3701470 - 3702039 | 21933.1 |
| glucose-1-phosphate thymidylyltransferase | DWY53_15960 | Not Available | Negative | 3702036 - 3702926 | 33116.2 |
| hypothetical protein | DWY53_15965 | Not Available | Negative | 3703102 - 3703353 | 9652.0 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

