Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | DWY53_15820 | Not Available | Negative | 3671362 - 3671865 | 19667.6 |
| trimeric intracellular cation channel family protein | DWY53_15825 | Not Available | Negative | 3672024 - 3672638 | 22186.8 |
| udp-n-acetyl glucosamine 2-epimerase | DWY53_15830 | Not Available | Positive | 3672722 - 3673810 | 40250.0 |
| duf3078 domain-containing protein | DWY53_15835 | Not Available | Negative | 3673910 - 3675304 | 53442.6 |
| ctp synthase | DWY53_15840 | Not Available | Positive | 3675514 - 3677112 | 60081.3 |
| membrane protein insertase yidc | DWY53_15845 | Not Available | Positive | 3677152 - 3679017 | 70945.9 |
| hypothetical protein | DWY53_15850 | Not Available | Negative | 3678947 - 3679180 | 8750.31 |
| s9 family peptidase | DWY53_15855 | Not Available | Positive | 3679245 - 3681350 | 79403.5 |
| hypothetical protein | DWY53_15860 | Not Available | Negative | 3681814 - 3682242 | 16940.2 |
| mannose-1-phosphate guanylyltransferase | DWY53_15865 | Not Available | Negative | 3682246 - 3683289 | 39459.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

