Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate carbamoyltransferase regulatory subunit | DWY53_15770 | Not Available | Positive | 3660566 - 3661033 | 17408.3 |
| flavin reductase family protein | DWY53_15775 | Not Available | Positive | 3661039 - 3661626 | 21914.5 |
| port family protein | DWY53_15780 | Not Available | Positive | 3661636 - 3662355 | 27401.5 |
| serine hydroxymethyltransferase | DWY53_15785 | Not Available | Positive | 3662602 - 3663882 | 46829.6 |
| mate family efflux transporter | DWY53_15790 | Not Available | Positive | 3664081 - 3665424 | 49290.3 |
| ompa family protein | DWY53_15795 | Not Available | Positive | 3665473 - 3666192 | 24484.1 |
| is256 family transposase | DWY53_15800 | Not Available | Negative | 3666398 - 3667630 | 46997.8 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DWY53_15805 | Not Available | Positive | 3667705 - 3668415 | 27348.5 |
| duf1460 domain-containing protein | DWY53_15810 | Not Available | Negative | 3668393 - 3669271 | 33182.4 |
| biotin/lipoyl-binding protein | DWY53_15815 | Not Available | Negative | 3669397 - 3671172 | 66738.8 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

