Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2023 family protein | DWY53_15605 | Not Available | Negative | 3634980 - 3635324 | 13416.7 |
| flavodoxin flda | DWY53_15610 | Not Available | Negative | 3635341 - 3635844 | 17951.1 |
| porin family protein | DWY53_15615 | Not Available | Negative | 3636116 - 3636637 | 19772.5 |
| hypothetical protein | DWY53_15620 | Not Available | Negative | 3636659 - 3637180 | 21224.9 |
| port family protein | DWY53_15625 | Not Available | Negative | 3637546 - 3638184 | 22850.2 |
| ion transporter | DWY53_15630 | Not Available | Negative | 3638413 - 3639171 | 28946.1 |
| port family protein | DWY53_15635 | Not Available | Negative | 3639337 - 3640014 | 25186.4 |
| mechanosensitive ion channel family protein | DWY53_15640 | Not Available | Negative | 3640048 - 3640893 | 30929.2 |
| alpha-1,2-fucosyltransferase | DWY53_15650 | Not Available | Positive | 3641805 - 3642650 | 33694.5 |
| upxy family transcription antiterminator | DWY53_15655 | Not Available | Negative | 3643018 - 3643536 | 20127.8 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

