Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase | DWY53_15555 | Not Available | Negative | 3620757 - 3622133 | 51801.1 |
| sodium:proton antiporter | DWY53_15560 | Not Available | Negative | 3622245 - 3623696 | 51427.2 |
| hded family acid-resistance protein | DWY53_15565 | Not Available | Positive | 3623891 - 3624454 | 20986.6 |
| translocation/assembly module tamb | DWY53_15570 | Not Available | Positive | 3624519 - 3628967 | 165966.0 |
| agmatine deiminase family protein | DWY53_15575 | Not Available | Positive | 3629034 - 3630059 | 39330.7 |
| acyltransferase | DWY53_15580 | Not Available | Positive | 3630071 - 3630958 | 33260.4 |
| duf4251 domain-containing protein | DWY53_15585 | Not Available | Positive | 3631073 - 3631663 | 21487.3 |
| methylated-dna--[protein]-cysteine s-methyltransferase | DWY53_15590 | Not Available | Negative | 3631757 - 3632284 | 19617.8 |
| aspartate--trna(asp/asn) ligase | DWY53_15595 | Not Available | Negative | 3632459 - 3634222 | 66472.9 |
| thioredoxin | DWY53_15600 | Not Available | Negative | 3634351 - 3634647 | 11390.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

