Phocaeicola vulgatus strain AF25-30LB

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF25-30LB is a Gram-positive, rod-shaped bacterium characterized by its anaerobic metabolism and mesophilic temperature range. The organism is non-motile and exists in a single-cell arrangement. It is notable for having two membranes and a single replicon, which are features often associated with certain bacterial groups. As a member of the microbiota, P. vulgatus strain AF25-30LB is host-associated, specifically found in Homo sapiens. This indicates a biotic relationship where the bacterium is free-living but thrives within the human host environment. The presence of flagella, despite the organism's non-motile nature, suggests adaptations that may play a role in its life cycle or interactions within the microbial community. Understanding the traits of P. vulgatus strain AF25-30LB is crucial, as it may contribute to the overall functionality of the gut microbiome in humans. The anaerobic nature of this bacterium suggests that it plays a role in processes such as fermentation or other metabolic pathways that require low-oxygen environments. As a free-living organism, it might also have implications for human health, particularly in maintaining gut balance or influencing immune responses. Further studies could elucidate its specific functions and interactions within the host, providing insights into its ecological role in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF25-30LB

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF25-30LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF25-30LB AF25-30LB.Scaf248, whole

Gene Summary

Adenine Count

1558347 bp

Thymine Count

1558364 bp

Guanine Count

1138401 bp

Cytosine Count

1152170 bp

Genome Length

5408603 bp

Protein-coding Genes

4536 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminopeptidaseDWY53_15555Not AvailableNegative3620757 - 362213351801.1
sodium:proton antiporterDWY53_15560Not AvailableNegative3622245 - 362369651427.2
hded family acid-resistance proteinDWY53_15565Not AvailablePositive3623891 - 362445420986.6
translocation/assembly module tambDWY53_15570Not AvailablePositive3624519 - 3628967165966.0
agmatine deiminase family proteinDWY53_15575Not AvailablePositive3629034 - 363005939330.7
acyltransferaseDWY53_15580Not AvailablePositive3630071 - 363095833260.4
duf4251 domain-containing proteinDWY53_15585Not AvailablePositive3631073 - 363166321487.3
methylated-dna--[protein]-cysteine s-methyltransferaseDWY53_15590Not AvailableNegative3631757 - 363228419617.8
aspartate--trna(asp/asn) ligaseDWY53_15595Not AvailableNegative3632459 - 363422266472.9
thioredoxinDWY53_15600Not AvailableNegative3634351 - 363464711390.7

Displaying genes 2991 – 3000 of 4643 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.