Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWY53_01315 | Not Available | Negative | 348804 - 350501 | 64148.2 |
| susc/raga family tonb-linked outer membrane protein | DWY53_01320 | Not Available | Negative | 350530 - 353379 | 106713.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_01325 | Not Available | Negative | 353420 - 355396 | 74961.3 |
| tonb-dependent receptor | DWY53_01330 | Not Available | Negative | 355415 - 358597 | 118488.0 |
| recombinase | DWY53_01335 | Not Available | Positive | 358886 - 360067 | 46016.4 |
| transcriptional regulator | DWY53_01340 | Not Available | Positive | 360692 - 361522 | 31690.1 |
| n-acetylmuramoyl-l-alanine amidase | DWY53_01345 | Not Available | Negative | 361588 - 362007 | 15499.5 |
| hypothetical protein | DWY53_01350 | Not Available | Negative | 362146 - 362538 | 14743.1 |
| dna-binding protein | DWY53_01355 | Not Available | Negative | 362535 - 363035 | 17891.4 |
| hypothetical protein | DWY53_01360 | Not Available | Positive | 363223 - 363657 | 16493.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

