Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWY53_15405 | Not Available | Positive | 3578671 - 3581946 | 121669.0 |
| susd family outer membrane lipoprotein nanu | DWY53_15410 | Not Available | Positive | 3581966 - 3583468 | 56986.5 |
| sialidase | DWY53_15415 | Not Available | Positive | 3583601 - 3585241 | 60315.2 |
| beta-n-acetylhexosaminidase | DWY53_15420 | Not Available | Positive | 3585245 - 3587251 | 77004.2 |
| sialate o-acetylesterase | DWY53_15425 | Not Available | Positive | 3587253 - 3587918 | 25131.8 |
| sialate o-acetylesterase | DWY53_15430 | Not Available | Positive | 3587915 - 3589978 | 77504.0 |
| glycoside hydrolase family 2 protein | DWY53_15435 | Not Available | Positive | 3590005 - 3592572 | 98692.7 |
| beta-n-acetylhexosaminidase | DWY53_15440 | Not Available | Positive | 3592589 - 3594913 | 86312.9 |
| cyclically-permuted mutarotase family protein | DWY53_15445 | Not Available | Positive | 3595100 - 3596227 | 40499.5 |
| beta-n-acetylhexosaminidase | DWY53_15450 | Not Available | Positive | 3596224 - 3598278 | 77115.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

