Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-d-manno-octulosonic acid transferase | DWY53_15205 | Not Available | Positive | 3532452 - 3533672 | 46862.5 |
| hypothetical protein | DWY53_15210 | Not Available | Positive | 3534209 - 3534367 | 5641.7 |
| arac family transcriptional regulator | DWY53_15215 | Not Available | Positive | 3534852 - 3535340 | 18915.8 |
| hypothetical protein | DWY53_15220 | Not Available | Positive | 3535418 - 3538276 | 105486.0 |
| hypothetical protein | DWY53_15225 | Not Available | Positive | 3538415 - 3539071 | 25861.1 |
| nudix domain-containing protein | DWY53_15230 | Not Available | Positive | 3539022 - 3539912 | 34147.9 |
| nad-dependent epimerase/dehydratase family protein | DWY53_15235 | Not Available | Positive | 3539920 - 3540762 | 31376.2 |
| hypothetical protein | DWY53_15240 | Not Available | Positive | 3540869 - 3541246 | 14077.9 |
| m20/m25/m40 family metallo-hydrolase | DWY53_15245 | Not Available | Negative | 3541252 - 3542316 | 39058.8 |
| long-chain fatty acid--coa ligase | DWY53_15250 | Not Available | Positive | 3542530 - 3544335 | 68396.2 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

