Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DWY53_15005 | Not Available | Positive | 3479738 - 3480967 | 46293.8 |
| mce family protein | DWY53_15010 | Not Available | Positive | 3480987 - 3481874 | 32671.6 |
| chromosomal replication initiator protein dnaa | DWY53_15015 | Not Available | Positive | 3482212 - 3483618 | 53559.4 |
| nadph-dependent oxidoreductase | DWY53_15020 | Not Available | Negative | 3483703 - 3484443 | 28380.1 |
| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | DWY53_15025 | Not Available | Positive | 3484787 - 3487333 | 96377.3 |
| hypothetical protein | DWY53_15030 | Not Available | Negative | 3487426 - 3490398 | 110658.0 |
| dihydroneopterin aldolase | DWY53_15035 | Not Available | Positive | 3490560 - 3490928 | 13944.8 |
| radical sam protein | DWY53_15040 | Not Available | Negative | 3491075 - 3491956 | 33261.0 |
| glycosyltransferase family 2 protein | DWY53_15045 | Not Available | Negative | 3492044 - 3493069 | 39392.6 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | DWY53_15050 | Not Available | Negative | 3493105 - 3494421 | 49152.8 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

