Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna cytosine methyltransferase | DWY53_14890 | Not Available | Positive | 3460294 - 3461637 | 50692.8 |
| hpaii family restriction endonuclease | DWY53_14895 | Not Available | Positive | 3461618 - 3462697 | 40802.6 |
| dna mismatch endonuclease vsr | DWY53_14900 | Not Available | Positive | 3462796 - 3463314 | 20670.9 |
| hypothetical protein | DWY53_14905 | Not Available | Positive | 3463375 - 3465339 | 78481.2 |
| hypothetical protein | DWY53_14910 | Not Available | Negative | 3465361 - 3466032 | 24883.4 |
| hypothetical protein | DWY53_14915 | Not Available | Negative | 3466029 - 3466574 | 20165.6 |
| type ia dna topoisomerase | DWY53_14920 | Not Available | Negative | 3466571 - 3467116 | 20168.2 |
| hypothetical protein | DWY53_14925 | Not Available | Negative | 3467143 - 3467883 | 27029.3 |
| duf3991 domain-containing protein | DWY53_14930 | Not Available | Negative | 3467889 - 3469076 | 44615.4 |
| duf1738 domain-containing protein | DWY53_14935 | Not Available | Negative | 3469106 - 3470431 | 49904.8 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

