Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | DWY53_14680 | Not Available | Positive | 3416602 - 3417516 | 34333.2 |
| hypothetical protein | DWY53_14685 | Not Available | Positive | 3417521 - 3417895 | 14479.4 |
| pasta domain-containing protein | DWY53_14690 | Not Available | Positive | 3417900 - 3420080 | 80368.7 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | DWY53_14695 | Not Available | Positive | 3420099 - 3421553 | 53314.3 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | DWY53_14700 | Not Available | Positive | 3421566 - 3422834 | 47029.8 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | DWY53_14705 | Not Available | Positive | 3422844 - 3424178 | 49945.6 |
| ftsw/roda/spove family cell cycle protein | DWY53_14710 | Not Available | Positive | 3424202 - 3425599 | 51362.1 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n- acetylglucosaminyltransferase | DWY53_14715 | Not Available | Positive | 3425664 - 3426794 | 40466.6 |
| udp-n-acetylmuramate--l-alanine ligase | DWY53_14720 | Not Available | Positive | 3426784 - 3428160 | 51104.2 |
| cell division protein ftsq | DWY53_14725 | Not Available | Positive | 3428157 - 3428894 | 27832.3 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

