Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycyl radical protein | DWY53_14575 | Not Available | Positive | 3396613 - 3399039 | 91968.5 |
| glycyl-radical enzyme activating protein | DWY53_14580 | Not Available | Positive | 3399044 - 3399952 | 33564.0 |
| xaa-pro aminopeptidase | DWY53_14585 | Not Available | Negative | 3400302 - 3400532 | 8754.29 |
| rna polymerase sigma-54 factor | DWY53_14590 | Not Available | Positive | 3400661 - 3402130 | 56144.2 |
| pap2 family protein | DWY53_14595 | Not Available | Positive | 3402141 - 3402797 | 24797.8 |
| glycine cleavage system protein h | DWY53_14600 | Not Available | Positive | 3402834 - 3403214 | 14151.4 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | DWY53_14605 | Not Available | Positive | 3403339 - 3403848 | 17745.0 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) | DWY53_14610 | Not Available | Positive | 3403932 - 3405776 | 68190.6 |
| glutaminase | DWY53_14615 | Not Available | Positive | 3405790 - 3406704 | 34090.9 |
| rna-binding protein | DWY53_14620 | Not Available | Negative | 3407019 - 3407390 | 13160.2 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

