Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arabinan endo-1,5-alpha-l-arabinosidase | DWY53_14510 | Not Available | Positive | 3379788 - 3381323 | 57814.3 |
| alpha-l-arabinofuranosidase | DWY53_14515 | Not Available | Positive | 3381347 - 3383326 | 75354.2 |
| trna 2-thiouridine(34) synthase mnma | DWY53_14525 | Not Available | Negative | 3385839 - 3386894 | 40157.7 |
| polyribonucleotide nucleotidyltransferase | DWY53_14535 | Not Available | Positive | 3387350 - 3389485 | 78631.8 |
| rubredoxin | DWY53_14540 | Not Available | Negative | 3389670 - 3389834 | 5868.75 |
| nad-dependent deacylase | DWY53_14545 | Not Available | Negative | 3389909 - 3390607 | 25689.8 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DWY53_14550 | Not Available | Positive | 3390735 - 3391319 | 21445.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DWY53_14555 | Not Available | Positive | 3391341 - 3392207 | 31388.7 |
| na/pi cotransporter family protein | DWY53_14565 | Not Available | Negative | 3392865 - 3394556 | 62873.7 |
| nucleoside kinase | DWY53_14570 | Not Available | Positive | 3394638 - 3396311 | 64724.8 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

