Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rok family protein | DWY53_01215 | Not Available | Positive | 315972 - 316943 | 34315.4 |
| l-rhamnose mutarotase | DWY53_01220 | Not Available | Positive | 316943 - 317332 | 15271.5 |
| isoaspartyl peptidase/l-asparaginase | DWY53_01225 | Not Available | Positive | 318041 - 319027 | 34958.3 |
| glycosyl hydrolase family 2 | DWY53_01230 | Not Available | Negative | 319957 - 322719 | 104014.0 |
| glycoside hydrolase family 28 protein | DWY53_01235 | Not Available | Negative | 322736 - 324160 | 52145.9 |
| hypothetical protein | DWY53_01240 | Not Available | Negative | 324176 - 324979 | 30949.3 |
| duf4450 domain-containing protein | DWY53_01245 | Not Available | Negative | 324976 - 325674 | 25996.3 |
| glycoside hydrolase family 28 protein | DWY53_01250 | Not Available | Negative | 325652 - 327136 | 55039.5 |
| rhamnogalacturonan acetylesterase | DWY53_01255 | Not Available | Negative | 327154 - 328428 | 47788.3 |
| beta-glucuronidase | DWY53_01260 | Not Available | Negative | 328447 - 331314 | 110113.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

