Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWY53_14260 | Not Available | Negative | 3310138 - 3310326 | 6806.25 |
| radical sam protein | DWY53_14265 | Not Available | Negative | 3310859 - 3311635 | 29363.3 |
| helix-hairpin-helix domain-containing protein | DWY53_14270 | Not Available | Negative | 3311681 - 3313753 | 81316.2 |
| duf4294 domain-containing protein | DWY53_14275 | Not Available | Positive | 3313850 - 3314422 | 22062.0 |
| trmh family rna methyltransferase | DWY53_14280 | Not Available | Negative | 3314453 - 3314989 | 19947.2 |
| tonb-dependent receptor | DWY53_14285 | Not Available | Positive | 3315712 - 3318030 | 88577.1 |
| quinolinate synthase nada | DWY53_14290 | Not Available | Positive | 3318133 - 3319125 | 36624.0 |
| non-canonical purine ntp diphosphatase | DWY53_14295 | Not Available | Negative | 3319380 - 3319961 | 21352.7 |
| n-acetyltransferase | DWY53_14300 | Not Available | Positive | 3320121 - 3320648 | 20715.6 |
| yitt family protein | DWY53_14305 | Not Available | Negative | 3320747 - 3321643 | 33215.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

