Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose 4-epimerase gale | DWY53_14205 | Not Available | Positive | 3288604 - 3289638 | 37984.7 |
| lruc domain-containing protein | DWY53_14210 | Not Available | Positive | 3289932 - 3291809 | 71350.9 |
| yitt family protein | DWY53_14215 | Not Available | Positive | 3291950 - 3292840 | 32573.4 |
| aspartate ammonia-lyase | DWY53_14220 | Not Available | Positive | 3293104 - 3294537 | 52251.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_14230 | Not Available | Positive | 3297803 - 3299422 | 61327.0 |
| hypothetical protein | DWY53_14235 | Not Available | Positive | 3299562 - 3302918 | 126810.0 |
| hybrid sensor histidine kinase/response regulator | DWY53_14240 | Not Available | Positive | 3303059 - 3307045 | 150526.0 |
| rubrerythrin family protein | DWY53_14245 | Not Available | Negative | 3307139 - 3307717 | 21626.4 |
| duf4884 domain-containing protein | DWY53_14250 | Not Available | Positive | 3307898 - 3308167 | 10182.1 |
| stas domain-containing protein | DWY53_14255 | Not Available | Positive | 3308266 - 3309948 | 60541.7 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

