Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor 4 | DWY53_14105 | Not Available | Positive | 3263069 - 3264850 | 66375.4 |
| na+/h+ antiporter nhaa | DWY53_14110 | Not Available | Positive | 3264982 - 3266322 | 48637.6 |
| pas domain-containing sensor histidine kinase | DWY53_14115 | Not Available | Negative | 3266325 - 3268598 | 87547.3 |
| amino acid permease | DWY53_14120 | Not Available | Negative | 3268815 - 3270392 | 56490.7 |
| two pore domain potassium channel family protein | DWY53_14125 | Not Available | Positive | 3270559 - 3271293 | 28208.9 |
| transglutaminase domain-containing protein | DWY53_14130 | Not Available | Positive | 3271375 - 3274038 | 99150.9 |
| copper homeostasis protein cutc | DWY53_14135 | Not Available | Negative | 3274130 - 3274993 | 31395.5 |
| glutaminase | DWY53_14140 | Not Available | Negative | 3275294 - 3276256 | 34730.8 |
| glutamate decarboxylase | DWY53_14145 | Not Available | Negative | 3276322 - 3277770 | 54672.7 |
| mfs transporter | DWY53_14150 | Not Available | Positive | 3278028 - 3279218 | 43381.1 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

