Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DWY53_14050 | Not Available | Negative | 3253518 - 3253934 | 15874.4 |
| dna-binding protein | DWY53_14055 | Not Available | Negative | 3254194 - 3254682 | 17535.0 |
| duf4248 domain-containing protein | DWY53_14060 | Not Available | Positive | 3255034 - 3255252 | 8477.29 |
| quinoprotein amine dehydrogenase | DWY53_14065 | Not Available | Negative | 3255476 - 3256552 | 39490.4 |
| replication-associated recombination protein a | DWY53_14075 | Not Available | Positive | 3258899 - 3260176 | 47220.9 |
| d-2-hydroxyacid dehydrogenase | DWY53_14080 | Not Available | Positive | 3260347 - 3261303 | 34358.8 |
| c_gcaxxg_c_c family protein | DWY53_14085 | Not Available | Positive | 3261347 - 3261850 | 18588.2 |
| hypothetical protein | DWY53_14090 | Not Available | Positive | 3262007 - 3262210 | 7433.15 |
| type ii toxin-antitoxin system hica family toxin | DWY53_14095 | Not Available | Positive | 3262365 - 3262553 | 6962.6 |
| antitoxin hicb | DWY53_14100 | Not Available | Positive | 3262593 - 3262985 | 14724.7 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

