Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3791 domain-containing protein | DWY53_13945 | Not Available | Positive | 3228588 - 3229016 | 15954.4 |
| duf3990 domain-containing protein | DWY53_13950 | Not Available | Positive | 3229013 - 3229486 | 18414.9 |
| hypothetical protein | DWY53_13955 | Not Available | Positive | 3229483 - 3229710 | 8602.18 |
| glutathione peroxidase | DWY53_13960 | Not Available | Negative | 3229741 - 3230280 | 20146.2 |
| sigma-54-dependent fis family transcriptional regulator | DWY53_13965 | Not Available | Positive | 3230398 - 3231738 | 50137.7 |
| atp-binding protein | DWY53_13970 | Not Available | Positive | 3231854 - 3233155 | 48986.9 |
| atp-dependent helicase | DWY53_13975 | Not Available | Positive | 3233236 - 3236412 | 122633.0 |
| pd-(d/e)xk nuclease family protein | DWY53_13980 | Not Available | Positive | 3236412 - 3239291 | 110954.0 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | DWY53_13985 | Not Available | Negative | 3239366 - 3240193 | 30753.2 |
| replicative dna helicase | DWY53_13990 | Not Available | Positive | 3240455 - 3242011 | 57459.0 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

