Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide pyruvyl transferase family protein | DWY53_13885 | Not Available | Negative | 3217904 - 3218917 | 38728.4 |
| glycosyltransferase family 4 protein | DWY53_13890 | Not Available | Negative | 3218970 - 3220079 | 42339.2 |
| glycosyltransferase family 2 protein | DWY53_13895 | Not Available | Negative | 3220079 - 3220954 | 34289.9 |
| o-antigen ligase domain-containing protein | DWY53_13900 | Not Available | Negative | 3220954 - 3222213 | 48896.8 |
| alpha-1,2-fucosyltransferase | DWY53_13905 | Not Available | Negative | 3222225 - 3223016 | 31410.3 |
| glycosyltransferase | DWY53_13910 | Not Available | Negative | 3223024 - 3223839 | 31005.6 |
| hypothetical protein | DWY53_13915 | Not Available | Negative | 3223853 - 3225220 | 51133.3 |
| hypothetical protein | DWY53_13925 | Not Available | Negative | 3225853 - 3226236 | 14845.0 |
| upxy family transcription antiterminator | DWY53_13930 | Not Available | Negative | 3226319 - 3226867 | 21158.1 |
| duf2442 domain-containing protein | DWY53_13940 | Not Available | Negative | 3227861 - 3228277 | 16026.2 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

