Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5110 domain-containing protein | DWY53_01115 | Not Available | Positive | 290703 - 293156 | 93609.3 |
| Trna-leu | Not Available | Not Available | Positive | 293253 - 293337 | Not Available |
| peptidase s41 | DWY53_01125 | Not Available | Negative | 293406 - 294434 | 39153.0 |
| duf3316 domain-containing protein | DWY53_01130 | Not Available | Negative | 294443 - 295288 | 32069.3 |
| dna gyrase/topoisomerase iv subunit a | DWY53_01135 | Not Available | Negative | 295292 - 297985 | 102664.0 |
| glycine--trna ligase | DWY53_01140 | Not Available | Positive | 298137 - 299678 | 59436.0 |
| peptidylprolyl isomerase | DWY53_01145 | Not Available | Positive | 299689 - 300330 | 23319.8 |
| aspartate-semialdehyde dehydrogenase | DWY53_01150 | Not Available | Negative | 300809 - 301819 | 37267.8 |
| cation:proton antiporter | DWY53_01155 | Not Available | Positive | 301986 - 304133 | 80167.6 |
| trna threonylcarbamoyladenosine dehydratase | DWY53_01160 | Not Available | Positive | 304120 - 304842 | 27062.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

