Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DWY53_13330 | Not Available | Positive | 3116597 - 3118993 | 92747.8 |
| abc transporter permease | DWY53_13335 | Not Available | Positive | 3119007 - 3121376 | 90041.8 |
| abc transporter permease | DWY53_13340 | Not Available | Positive | 3121397 - 3123796 | 91452.7 |
| abc transporter atp-binding protein | DWY53_13345 | Not Available | Positive | 3123816 - 3124490 | 24767.0 |
| abc transporter permease | DWY53_13350 | Not Available | Positive | 3124550 - 3126901 | 89899.0 |
| dmt family transporter | DWY53_13355 | Not Available | Negative | 3126909 - 3127796 | 31789.8 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWY53_13360 | Not Available | Negative | 3127884 - 3129071 | 44190.9 |
| diacylglycerol kinase family lipid kinase | DWY53_13365 | Not Available | Positive | 3129316 - 3130350 | 38107.2 |
| trna (adenosine(37)-n6)-methyltransferase trmm | DWY53_13370 | Not Available | Negative | 3130431 - 3131135 | 26207.4 |
| endopeptidase la | DWY53_13375 | Not Available | Positive | 3131317 - 3133794 | 92665.5 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

