Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWY53_13180 | Not Available | Positive | 3082968 - 3084830 | 70185.9 |
| duf4976 domain-containing protein | DWY53_13185 | Not Available | Positive | 3084853 - 3086427 | 61178.7 |
| hybrid sensor histidine kinase/response regulator | DWY53_13190 | Not Available | Negative | 3086484 - 3090371 | 148508.0 |
| glycoside hydrolase family 95 protein | DWY53_13195 | Not Available | Negative | 3090576 - 3093032 | 92116.2 |
| insulinase family protein | DWY53_13200 | Not Available | Negative | 3093131 - 3094351 | 46465.1 |
| tigr00730 family rossman fold protein | DWY53_13205 | Not Available | Positive | 3094453 - 3094989 | 19870.1 |
| sis domain-containing protein | DWY53_13210 | Not Available | Positive | 3095007 - 3095609 | 21797.5 |
| carbohydrate kinase | DWY53_13215 | Not Available | Positive | 3095720 - 3096640 | 34622.3 |
| glycoside hydrolase | DWY53_13220 | Not Available | Positive | 3096680 - 3097717 | 38531.7 |
| aminopeptidase | DWY53_13225 | Not Available | Negative | 3097728 - 3100250 | 97378.2 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

