Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sorbitol dehydrogenase | DWY53_01065 | Not Available | Negative | 276224 - 277243 | 36707.0 |
| l-fucose:h+ symporter permease | DWY53_01070 | Not Available | Negative | 277266 - 278525 | 47261.1 |
| amidohydrolase | DWY53_01075 | Not Available | Negative | 278552 - 279475 | 35621.2 |
| aldo/keto reductase | DWY53_01080 | Not Available | Negative | 279493 - 280425 | 34845.4 |
| arac family transcriptional regulator | DWY53_01085 | Not Available | Negative | 280543 - 281403 | 33567.5 |
| alpha-l-fucosidase | DWY53_01090 | Not Available | Positive | 281645 - 283291 | 62633.7 |
| tonb-dependent receptor | DWY53_01095 | Not Available | Positive | 283382 - 286453 | 113423.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_01100 | Not Available | Positive | 286479 - 288167 | 64006.0 |
| l-rhamnose mutarotase | DWY53_01105 | Not Available | Positive | 288190 - 288573 | 15537.8 |
| glycoside hydrolase family 97 protein | DWY53_01110 | Not Available | Positive | 288645 - 290528 | 71882.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

