Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | DWY53_00995 | Not Available | Negative | 260819 - 262819 | 76877.1 |
| spfh domain-containing protein | DWY53_01005 | Not Available | Positive | 263391 - 264341 | 35395.3 |
| arc family dna-binding protein | DWY53_01010 | Not Available | Positive | 264350 - 264544 | 7530.27 |
| carboxypeptidase-like regulatory domain-containing protein | DWY53_01015 | Not Available | Positive | 264705 - 265982 | 49688.8 |
| rna polymerase sigma-70 factor | DWY53_01020 | Not Available | Positive | 266034 - 266585 | 22089.7 |
| anti-sigma factor | DWY53_01025 | Not Available | Positive | 266582 - 267436 | 32355.8 |
| carboxypeptidase-like regulatory domain-containing protein | DWY53_01030 | Not Available | Positive | 267446 - 269002 | 60100.6 |
| Trna-ile | Not Available | Not Available | Positive | 272004 - 272080 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 272095 - 272168 | Not Available |
| naat family transporter | DWY53_01060 | Not Available | Positive | 275507 - 276151 | 23867.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

