Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWY53_12170 | Not Available | Negative | 2879206 - 2880909 | 63029.3 |
| susc/raga family tonb-linked outer membrane protein | DWY53_12175 | Not Available | Negative | 2880909 - 2883950 | 112142.0 |
| rna polymerase sigma-70 factor | DWY53_12180 | Not Available | Positive | 2884271 - 2884816 | 21413.0 |
| phosphoribosylglycinamide formyltransferase | DWY53_12185 | Not Available | Negative | 2884788 - 2885366 | 21386.1 |
| acyl carrier protein | DWY53_12190 | Not Available | Positive | 2885519 - 2885755 | 8382.75 |
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | DWY53_12195 | Not Available | Positive | 2885774 - 2887039 | 44835.9 |
| ribonuclease iii | DWY53_12200 | Not Available | Positive | 2887042 - 2887968 | 35224.2 |
| sulfatase | DWY53_12205 | Not Available | Negative | 2888113 - 2889666 | 57886.7 |
| glycoside hydrolase family 36 | DWY53_12210 | Not Available | Negative | 2889685 - 2891760 | 78619.8 |
| glycoside hydrolase family 29 | DWY53_12215 | Not Available | Negative | 2891767 - 2893152 | 52670.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

