Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium ion-translocating decarboxylase subunit beta | DWY53_00895 | Not Available | Positive | 234403 - 235638 | 44261.9 |
| tlpa family protein disulfide reductase | DWY53_00900 | Not Available | Negative | 235834 - 237183 | 50445.2 |
| thioredoxin | DWY53_00905 | Not Available | Negative | 237185 - 238351 | 44545.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_00910 | Not Available | Negative | 238370 - 239860 | 55759.7 |
| susc/raga family tonb-linked outer membrane protein | DWY53_00915 | Not Available | Negative | 239881 - 243198 | 122594.0 |
| duf4974 domain-containing protein | DWY53_00920 | Not Available | Negative | 243254 - 244414 | 44078.4 |
| sigma-70 family rna polymerase sigma factor | DWY53_00925 | Not Available | Negative | 244481 - 245065 | 23217.7 |
| glycoside hydrolase | DWY53_00930 | Not Available | Negative | 245166 - 246830 | 61567.8 |
| duf4861 domain-containing protein | DWY53_00935 | Not Available | Negative | 246844 - 248058 | 45671.0 |
| glycoside hydrolase family 28 protein | DWY53_00940 | Not Available | Negative | 248197 - 249816 | 59176.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

