Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWY53_11135 | Not Available | Negative | 2666051 - 2667748 | 64613.3 |
| susc/raga family tonb-linked outer membrane protein | DWY53_11140 | Not Available | Negative | 2667768 - 2671037 | 122349.0 |
| duf4974 domain-containing protein | DWY53_11145 | Not Available | Negative | 2671066 - 2672052 | 38382.9 |
| hypothetical protein | DWY53_11155 | Not Available | Positive | 2672712 - 2672903 | 7204.75 |
| Trna-ser | Not Available | Not Available | Positive | 2672882 - 2672971 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 2673324 - 2673399 | Not Available |
| formate c-acetyltransferase | DWY53_11170 | Not Available | Positive | 2673603 - 2675831 | 84089.3 |
| pyruvate formate lyase-activating protein | DWY53_11175 | Not Available | Positive | 2675900 - 2676628 | 28010.6 |
| hypothetical protein | DWY53_11180 | Not Available | Negative | 2676730 - 2677317 | 21700.1 |
| lactate utilization protein | DWY53_11185 | Not Available | Negative | 2677321 - 2678688 | 51567.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

