Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter substrate-binding protein | DWY53_11085 | Not Available | Negative | 2651300 - 2652148 | 31246.1 |
| multidrug dmt transporter permease | DWY53_11090 | Not Available | Negative | 2652156 - 2653172 | 35979.8 |
| fucose isomerase | DWY53_11095 | Not Available | Negative | 2653185 - 2654609 | 52346.9 |
| glycerol kinase glpk | DWY53_11100 | Not Available | Negative | 2654643 - 2656139 | 55251.4 |
| transketolase family protein | DWY53_11105 | Not Available | Negative | 2656165 - 2657103 | 33652.6 |
| transketolase | DWY53_11110 | Not Available | Negative | 2657093 - 2657938 | 31469.7 |
| deor/glpr transcriptional regulator | DWY53_11115 | Not Available | Negative | 2658281 - 2659036 | 27350.1 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | DWY53_11120 | Not Available | Negative | 2659048 - 2659662 | 22216.8 |
| duf5060 domain-containing protein | DWY53_11125 | Not Available | Negative | 2659784 - 2661388 | 61912.9 |
| hybrid sensor histidine kinase/response regulator | DWY53_11130 | Not Available | Negative | 2661553 - 2665875 | 165108.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

