Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DWY53_11030 | Not Available | Positive | 2636409 - 2636990 | 23075.8 |
| crispr-associated endonuclease cas2 | DWY53_11040 | Not Available | Negative | 2640987 - 2641277 | 11015.4 |
| type i-c crispr-associated endonuclease cas1 | DWY53_11045 | Not Available | Negative | 2641287 - 2642309 | 38708.3 |
| crispr-associated protein cas4 | DWY53_11050 | Not Available | Negative | 2642306 - 2642971 | 25838.0 |
| type i-c crispr-associated protein cas7/csd2 | DWY53_11055 | Not Available | Negative | 2642981 - 2643865 | 32507.9 |
| type i-c crispr-associated protein cas8c/csd1 | DWY53_11060 | Not Available | Negative | 2643885 - 2645600 | 65169.3 |
| type i-c crispr-associated protein cas5 | DWY53_11065 | Not Available | Negative | 2645597 - 2646277 | 26800.2 |
| hypothetical protein | DWY53_11070 | Not Available | Negative | 2646279 - 2647139 | 33244.5 |
| crispr-associated helicase cas3' | DWY53_11075 | Not Available | Negative | 2647150 - 2649375 | 84360.1 |
| histidine--trna ligase | DWY53_11080 | Not Available | Negative | 2649777 - 2651141 | 50299.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

