Phocaeicola vulgatus strain AF25-30LB

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF25-30LB is a Gram-positive, rod-shaped bacterium characterized by its anaerobic metabolism and mesophilic temperature range. The organism is non-motile and exists in a single-cell arrangement. It is notable for having two membranes and a single replicon, which are features often associated with certain bacterial groups. As a member of the microbiota, P. vulgatus strain AF25-30LB is host-associated, specifically found in Homo sapiens. This indicates a biotic relationship where the bacterium is free-living but thrives within the human host environment. The presence of flagella, despite the organism's non-motile nature, suggests adaptations that may play a role in its life cycle or interactions within the microbial community. Understanding the traits of P. vulgatus strain AF25-30LB is crucial, as it may contribute to the overall functionality of the gut microbiome in humans. The anaerobic nature of this bacterium suggests that it plays a role in processes such as fermentation or other metabolic pathways that require low-oxygen environments. As a free-living organism, it might also have implications for human health, particularly in maintaining gut balance or influencing immune responses. Further studies could elucidate its specific functions and interactions within the host, providing insights into its ecological role in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF25-30LB

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF25-30LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF25-30LB AF25-30LB.Scaf248, whole

Gene Summary

Adenine Count

1558347 bp

Thymine Count

1558364 bp

Guanine Count

1138401 bp

Cytosine Count

1152170 bp

Genome Length

5408603 bp

Protein-coding Genes

4536 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma-70 factorDWY53_11030Not AvailablePositive2636409 - 263699023075.8
crispr-associated endonuclease cas2DWY53_11040Not AvailableNegative2640987 - 264127711015.4
type i-c crispr-associated endonuclease cas1DWY53_11045Not AvailableNegative2641287 - 264230938708.3
crispr-associated protein cas4DWY53_11050Not AvailableNegative2642306 - 264297125838.0
type i-c crispr-associated protein cas7/csd2DWY53_11055Not AvailableNegative2642981 - 264386532507.9
type i-c crispr-associated protein cas8c/csd1DWY53_11060Not AvailableNegative2643885 - 264560065169.3
type i-c crispr-associated protein cas5DWY53_11065Not AvailableNegative2645597 - 264627726800.2
hypothetical proteinDWY53_11070Not AvailableNegative2646279 - 264713933244.5
crispr-associated helicase cas3'DWY53_11075Not AvailableNegative2647150 - 264937584360.1
histidine--trna ligaseDWY53_11080Not AvailableNegative2649777 - 265114150299.7

Displaying genes 2151 – 2160 of 4643 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.