Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 88 protein | DWY53_10980 | Not Available | Negative | 2616267 - 2617682 | 53275.8 |
| rhamnogalacturonan lyase | DWY53_10985 | Not Available | Negative | 2617695 - 2619602 | 70730.5 |
| glycoside hydrolase family 28 protein | DWY53_10990 | Not Available | Negative | 2619599 - 2620987 | 52124.8 |
| hypothetical protein | DWY53_10995 | Not Available | Negative | 2621051 - 2623402 | 89454.8 |
| hypothetical protein | DWY53_11000 | Not Available | Negative | 2623676 - 2625793 | 81203.0 |
| hypothetical protein | DWY53_11005 | Not Available | Negative | 2625850 - 2628090 | 84258.7 |
| pectate lyase | DWY53_11010 | Not Available | Negative | 2628099 - 2629607 | 57138.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_11015 | Not Available | Negative | 2629700 - 2631577 | 70190.4 |
| susc/raga family tonb-linked outer membrane protein | DWY53_11020 | Not Available | Negative | 2631596 - 2635135 | 130878.0 |
| fecr family protein | DWY53_11025 | Not Available | Negative | 2635253 - 2636272 | 39133.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

