Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWY53_10880 | Not Available | Positive | 2575580 - 2578888 | 123727.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_10885 | Not Available | Positive | 2578904 - 2580928 | 76769.4 |
| tonb-dependent receptor | DWY53_10890 | Not Available | Positive | 2581332 - 2584433 | 114541.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_10895 | Not Available | Positive | 2584447 - 2586138 | 63001.3 |
| beta-xylosidase | DWY53_10900 | Not Available | Positive | 2586423 - 2588879 | 94000.6 |
| beta-glucanase | DWY53_10905 | Not Available | Positive | 2588904 - 2590046 | 42600.3 |
| glycoside hydrolase | DWY53_10910 | Not Available | Positive | 2590371 - 2591372 | 37871.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_10915 | Not Available | Negative | 2591492 - 2593045 | 58382.6 |
| tonb-dependent receptor | DWY53_10920 | Not Available | Negative | 2593058 - 2596129 | 113213.0 |
| glycoside hydrolase | DWY53_10925 | Not Available | Positive | 2596710 - 2598656 | 73440.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

