Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh:flavin oxidoreductase | DWY53_00840 | Not Available | Positive | 225056 - 226279 | 45532.4 |
| sdr family nad(p)-dependent oxidoreductase | DWY53_00845 | Not Available | Positive | 226276 - 227136 | 31842.1 |
| dmt family transporter | DWY53_00850 | Not Available | Negative | 227244 - 228170 | 33083.5 |
| atp-binding cassette domain-containing protein | DWY53_00855 | Not Available | Positive | 228253 - 229074 | 31108.5 |
| duf4435 domain-containing protein | DWY53_00860 | Not Available | Positive | 229096 - 230091 | 39179.5 |
| doxx family protein | DWY53_00865 | Not Available | Negative | 230097 - 230537 | 16186.6 |
| had family hydrolase | DWY53_00875 | Not Available | Negative | 230775 - 231428 | 24293.1 |
| nitroreductase | DWY53_00880 | Not Available | Positive | 231491 - 231991 | 18878.7 |
| oxaloacetate decarboxylase | DWY53_00885 | Not Available | Positive | 232259 - 232510 | 8725.21 |
| oxaloacetate decarboxylase | DWY53_00890 | Not Available | Positive | 232541 - 234403 | 68971.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

