Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rrna cytosine-c5-methyltransferase | DWY53_00780 | Not Available | Positive | 210072 - 211499 | 53380.1 |
| dna topoisomerase iii | DWY53_00785 | Not Available | Negative | 211636 - 213777 | 79859.0 |
| hypothetical protein | DWY53_00790 | Not Available | Positive | 214050 - 214916 | 33183.5 |
| dihydrolipoamide acyltransferase | DWY53_00795 | Not Available | Positive | 215149 - 215523 | 13122.9 |
| helicase | DWY53_00800 | Not Available | Negative | 215708 - 217600 | 72731.5 |
| aconitate hydratase | DWY53_00805 | Not Available | Positive | 217772 - 220015 | 81198.7 |
| nadp-dependent isocitrate dehydrogenase | DWY53_00810 | Not Available | Positive | 220019 - 221164 | 41576.9 |
| citrate/2-methylcitrate synthase | DWY53_00815 | Not Available | Positive | 221177 - 222520 | 51048.6 |
| gnat family n-acetyltransferase | DWY53_00825 | Not Available | Negative | 223198 - 223659 | 17839.6 |
| duf1295 domain-containing protein | DWY53_00835 | Not Available | Positive | 224229 - 224993 | 29496.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

