Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWY53_10045 | Not Available | Positive | 2401641 - 2403959 | 86968.6 |
| duf4980 domain-containing protein | DWY53_10050 | Not Available | Positive | 2404108 - 2405991 | 70937.3 |
| mfs transporter | DWY53_10055 | Not Available | Positive | 2406007 - 2407167 | 41814.0 |
| carbohydrate kinase | DWY53_10060 | Not Available | Positive | 2407195 - 2408082 | 32432.2 |
| response regulator | DWY53_10065 | Not Available | Positive | 2408278 - 2411004 | 103092.0 |
| amino acid-binding protein | DWY53_10070 | Not Available | Negative | 2411047 - 2411475 | 15643.0 |
| phenylacetate--coa ligase | DWY53_10075 | Not Available | Negative | 2411487 - 2412785 | 49228.5 |
| duf3256 family protein | DWY53_10080 | Not Available | Positive | 2412899 - 2413546 | 24349.6 |
| 50s ribosomal protein l31 type b | DWY53_10085 | Not Available | Negative | 2413631 - 2413885 | 9656.59 |
| class ii fructose-1,6-bisphosphate aldolase | DWY53_10090 | Not Available | Positive | 2414217 - 2415221 | 36460.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

