Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rip metalloprotease rsep | DWY53_09995 | Not Available | Positive | 2389746 - 2391089 | 50887.1 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DWY53_10000 | Not Available | Negative | 2391664 - 2392122 | 17410.7 |
| anaerobic ribonucleoside triphosphate reductase | DWY53_10005 | Not Available | Negative | 2392128 - 2394404 | 86287.2 |
| hemolysin iii | DWY53_10010 | Not Available | Negative | 2394699 - 2395334 | 23650.2 |
| hdig domain-containing protein | DWY53_10015 | Not Available | Negative | 2395339 - 2396841 | 57599.9 |
| hypothetical protein | DWY53_10020 | Not Available | Positive | 2396859 - 2397683 | 30836.1 |
| holliday junction branch migration protein ruva | DWY53_10025 | Not Available | Negative | 2397771 - 2398364 | 21141.8 |
| diaminopimelate dehydrogenase | DWY53_10030 | Not Available | Positive | 2398540 - 2399439 | 32291.9 |
| prolipoprotein diacylglyceryl transferase | DWY53_10035 | Not Available | Positive | 2399546 - 2400352 | 31284.6 |
| dna-binding protein | DWY53_10040 | Not Available | Negative | 2400394 - 2401005 | 23005.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

