Phocaeicola vulgatus strain AF25-30LB

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF25-30LB is a Gram-positive, rod-shaped bacterium characterized by its anaerobic metabolism and mesophilic temperature range. The organism is non-motile and exists in a single-cell arrangement. It is notable for having two membranes and a single replicon, which are features often associated with certain bacterial groups. As a member of the microbiota, P. vulgatus strain AF25-30LB is host-associated, specifically found in Homo sapiens. This indicates a biotic relationship where the bacterium is free-living but thrives within the human host environment. The presence of flagella, despite the organism's non-motile nature, suggests adaptations that may play a role in its life cycle or interactions within the microbial community. Understanding the traits of P. vulgatus strain AF25-30LB is crucial, as it may contribute to the overall functionality of the gut microbiome in humans. The anaerobic nature of this bacterium suggests that it plays a role in processes such as fermentation or other metabolic pathways that require low-oxygen environments. As a free-living organism, it might also have implications for human health, particularly in maintaining gut balance or influencing immune responses. Further studies could elucidate its specific functions and interactions within the host, providing insights into its ecological role in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF25-30LB

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF25-30LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF25-30LB AF25-30LB.Scaf248, whole

Gene Summary

Adenine Count

1558347 bp

Thymine Count

1558364 bp

Guanine Count

1138401 bp

Cytosine Count

1152170 bp

Genome Length

5408603 bp

Protein-coding Genes

4536 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nicotinate-nucleotide adenylyltransferaseDWY53_09945Not AvailableNegative2382114 - 238268622162.7
hypothetical proteinDWY53_09950Not AvailableNegative2382668 - 23828506793.87
guanylate kinaseDWY53_09955Not AvailableNegative2382855 - 238342421367.4
yicc family proteinDWY53_09960Not AvailableNegative2383471 - 238434633867.7
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsabDWY53_09965Not AvailablePositive2384442 - 238513125285.7
duf4290 domain-containing proteinDWY53_09970Not AvailablePositive2385178 - 238580424903.9
udp-n-acetylglucosamine 1-carboxyvinyltransferaseDWY53_09975Not AvailablePositive2385823 - 238712747644.1
16s rrna processing protein rimmDWY53_09980Not AvailablePositive2387139 - 238765719831.7
m23 family peptidaseDWY53_09985Not AvailablePositive2387676 - 238853332093.4
1-deoxy-d-xylulose-5-phosphate reductoisomeraseDWY53_09990Not AvailablePositive2388541 - 238968942392.3

Displaying genes 1941 – 1950 of 4643 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.