Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinate-nucleotide adenylyltransferase | DWY53_09945 | Not Available | Negative | 2382114 - 2382686 | 22162.7 |
| hypothetical protein | DWY53_09950 | Not Available | Negative | 2382668 - 2382850 | 6793.87 |
| guanylate kinase | DWY53_09955 | Not Available | Negative | 2382855 - 2383424 | 21367.4 |
| yicc family protein | DWY53_09960 | Not Available | Negative | 2383471 - 2384346 | 33867.7 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | DWY53_09965 | Not Available | Positive | 2384442 - 2385131 | 25285.7 |
| duf4290 domain-containing protein | DWY53_09970 | Not Available | Positive | 2385178 - 2385804 | 24903.9 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DWY53_09975 | Not Available | Positive | 2385823 - 2387127 | 47644.1 |
| 16s rrna processing protein rimm | DWY53_09980 | Not Available | Positive | 2387139 - 2387657 | 19831.7 |
| m23 family peptidase | DWY53_09985 | Not Available | Positive | 2387676 - 2388533 | 32093.4 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DWY53_09990 | Not Available | Positive | 2388541 - 2389689 | 42392.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

