Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | DWY53_09845 | Not Available | Positive | 2364261 - 2364626 | 14354.3 |
| aminopeptidase | DWY53_09850 | Not Available | Negative | 2364724 - 2366217 | 55015.9 |
| mate family efflux transporter | DWY53_09855 | Not Available | Positive | 2366380 - 2367729 | 49665.5 |
| adenylosuccinate lyase | DWY53_09860 | Not Available | Positive | 2367823 - 2369169 | 50932.1 |
| pseudouridine synthase | DWY53_09865 | Not Available | Positive | 2369245 - 2370711 | 56182.9 |
| asparagine--trna ligase | DWY53_09870 | Not Available | Positive | 2370734 - 2372137 | 53432.1 |
| duf4488 domain-containing protein | DWY53_09875 | Not Available | Positive | 2372300 - 2372794 | 18600.8 |
| zeta toxin | DWY53_09880 | Not Available | Positive | 2373155 - 2373730 | 21483.9 |
| hypothetical protein | DWY53_09885 | Not Available | Positive | 2373720 - 2373965 | 9041.7 |
| 50s ribosomal protein l13 | DWY53_09890 | Not Available | Positive | 2374265 - 2374726 | 17129.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

