Phocaeicola vulgatus strain AF25-30LB

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF25-30LB is a Gram-positive, rod-shaped bacterium characterized by its anaerobic metabolism and mesophilic temperature range. The organism is non-motile and exists in a single-cell arrangement. It is notable for having two membranes and a single replicon, which are features often associated with certain bacterial groups. As a member of the microbiota, P. vulgatus strain AF25-30LB is host-associated, specifically found in Homo sapiens. This indicates a biotic relationship where the bacterium is free-living but thrives within the human host environment. The presence of flagella, despite the organism's non-motile nature, suggests adaptations that may play a role in its life cycle or interactions within the microbial community. Understanding the traits of P. vulgatus strain AF25-30LB is crucial, as it may contribute to the overall functionality of the gut microbiome in humans. The anaerobic nature of this bacterium suggests that it plays a role in processes such as fermentation or other metabolic pathways that require low-oxygen environments. As a free-living organism, it might also have implications for human health, particularly in maintaining gut balance or influencing immune responses. Further studies could elucidate its specific functions and interactions within the host, providing insights into its ecological role in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF25-30LB

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF25-30LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF25-30LB AF25-30LB.Scaf248, whole

Gene Summary

Adenine Count

1558347 bp

Thymine Count

1558364 bp

Guanine Count

1138401 bp

Cytosine Count

1152170 bp

Genome Length

5408603 bp

Protein-coding Genes

4536 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gntr family transcriptional regulatorDWY53_09845Not AvailablePositive2364261 - 236462614354.3
aminopeptidaseDWY53_09850Not AvailableNegative2364724 - 236621755015.9
mate family efflux transporterDWY53_09855Not AvailablePositive2366380 - 236772949665.5
adenylosuccinate lyaseDWY53_09860Not AvailablePositive2367823 - 236916950932.1
pseudouridine synthaseDWY53_09865Not AvailablePositive2369245 - 237071156182.9
asparagine--trna ligaseDWY53_09870Not AvailablePositive2370734 - 237213753432.1
duf4488 domain-containing proteinDWY53_09875Not AvailablePositive2372300 - 237279418600.8
zeta toxinDWY53_09880Not AvailablePositive2373155 - 237373021483.9
hypothetical proteinDWY53_09885Not AvailablePositive2373720 - 23739659041.7
50s ribosomal protein l13DWY53_09890Not AvailablePositive2374265 - 237472617129.7

Displaying genes 1921 – 1930 of 4643 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.