Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DWY53_00730 | Not Available | Negative | 194070 - 196472 | 89828.8 |
| glycoside hydrolase family 97 protein | DWY53_00735 | Not Available | Negative | 196509 - 199232 | 103405.0 |
| duf4859 domain-containing protein | DWY53_00740 | Not Available | Negative | 199431 - 201695 | 84470.6 |
| duf4859 domain-containing protein | DWY53_00745 | Not Available | Negative | 201951 - 202961 | 36202.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_00750 | Not Available | Negative | 202993 - 204672 | 63688.1 |
| susc/raga family tonb-linked outer membrane protein | DWY53_00755 | Not Available | Negative | 204693 - 207400 | 101430.0 |
| thymidylate synthase | DWY53_00760 | Not Available | Negative | 207492 - 208286 | 30480.3 |
| duf5056 domain-containing protein | DWY53_00765 | Not Available | Negative | 208369 - 208698 | 12355.1 |
| sigma-70 family rna polymerase sigma factor | DWY53_00770 | Not Available | Negative | 208682 - 209230 | 21091.3 |
| hypothetical protein | DWY53_00775 | Not Available | Negative | 209233 - 209940 | 26005.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

