Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWY53_09570 | Not Available | Negative | 2309144 - 2312497 | 125102.0 |
| fecr family protein | DWY53_09575 | Not Available | Negative | 2312513 - 2313682 | 44531.5 |
| rna polymerase sigma-70 factor | DWY53_09580 | Not Available | Negative | 2313786 - 2314337 | 21576.8 |
| endonuclease muts2 | DWY53_09585 | Not Available | Negative | 2314417 - 2316921 | 95122.6 |
| Trna-ser | Not Available | Not Available | Positive | 2317068 - 2317152 | Not Available |
| site-specific integrase | DWY53_09595 | Not Available | Positive | 2317454 - 2318554 | 42687.1 |
| atp-binding protein | DWY53_09600 | Not Available | Negative | 2318724 - 2320769 | 77095.6 |
| fibronectin-binding protein (fbp) | DWY53_09605 | Not Available | Negative | 2320776 - 2322209 | 52729.7 |
| hypothetical protein | DWY53_09610 | Not Available | Negative | 2322425 - 2325064 | 101438.0 |
| site-specific dna-methyltransferase | DWY53_09615 | Not Available | Negative | 2325070 - 2326995 | 73155.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

