Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glycosidase | DWY53_09465 | Not Available | Negative | 2279411 - 2282440 | 114401.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_09470 | Not Available | Negative | 2282526 - 2284214 | 64111.6 |
| susc/raga family tonb-linked outer membrane protein | DWY53_09475 | Not Available | Negative | 2284233 - 2287532 | 122190.0 |
| fecr family protein | DWY53_09480 | Not Available | Negative | 2287588 - 2288520 | 35880.6 |
| rna polymerase sigma-70 factor | DWY53_09485 | Not Available | Negative | 2288591 - 2289154 | 22518.2 |
| carbohydrate esterase | DWY53_09490 | Not Available | Negative | 2289219 - 2290739 | 55706.4 |
| hypothetical protein | DWY53_09495 | Not Available | Negative | 2290802 - 2293348 | 94970.7 |
| glycoside hydrolase | DWY53_09505 | Not Available | Negative | 2293892 - 2295880 | 75029.1 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_09510 | Not Available | Negative | 2296260 - 2296752 | 17907.0 |
| Trna-glu | Not Available | Not Available | Positive | 2296860 - 2296934 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

