Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s9 family peptidase | DWY53_09415 | Not Available | Negative | 2258250 - 2260691 | 94325.1 |
| hypothetical protein | DWY53_09420 | Not Available | Negative | 2260801 - 2261535 | 27067.4 |
| hybrid sensor histidine kinase/response regulator | DWY53_09425 | Not Available | Negative | 2261730 - 2266130 | 169199.0 |
| pectin esterase | DWY53_09430 | Not Available | Negative | 2266325 - 2268049 | 63984.5 |
| hypothetical protein | DWY53_09435 | Not Available | Negative | 2268056 - 2269216 | 43464.3 |
| pectate lyase | DWY53_09440 | Not Available | Negative | 2269237 - 2270850 | 61375.3 |
| cupin domain-containing protein | DWY53_09445 | Not Available | Positive | 2271039 - 2271530 | 18182.0 |
| hypothetical protein | DWY53_09450 | Not Available | Negative | 2271624 - 2273624 | 74937.3 |
| duf4968 domain-containing protein | DWY53_09455 | Not Available | Negative | 2273642 - 2276026 | 91782.7 |
| glycoside hydrolase family 2 | DWY53_09460 | Not Available | Negative | 2276040 - 2279408 | 126868.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

