Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 16 protein | DWY53_09050 | Not Available | Negative | 2162117 - 2162908 | 30551.4 |
| phosphoglucosamine mutase | DWY53_09055 | Not Available | Negative | 2162999 - 2164387 | 50475.7 |
| duf4827 domain-containing protein | DWY53_09060 | Not Available | Negative | 2164384 - 2165019 | 24123.5 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DWY53_09065 | Not Available | Negative | 2165102 - 2166142 | 39376.4 |
| comec family competence protein | DWY53_09070 | Not Available | Negative | 2166192 - 2168111 | 72654.5 |
| ribulose-phosphate 3-epimerase | DWY53_09075 | Not Available | Negative | 2168158 - 2168811 | 23941.4 |
| porin family protein | DWY53_09080 | Not Available | Negative | 2168887 - 2170182 | 48038.6 |
| sigma-70 family rna polymerase sigma factor | DWY53_09085 | Not Available | Negative | 2170185 - 2170727 | 20885.1 |
| hypothetical protein | DWY53_09090 | Not Available | Positive | 2170885 - 2171667 | 29095.8 |
| methionyl-trna formyltransferase | DWY53_09095 | Not Available | Negative | 2171740 - 2172714 | 36638.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

